PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4307_f_11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 449aa    MW: 50174.4 Da    PI: 8.4458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4307_f_11genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.87e-07730126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  ++r G C + ++C+FaHg
  Neem_4307_f_11  7 YKTKLCVLYQR-GRCTR-PTCSFAHG 30
                    9**********.*****.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-9535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549632IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044631IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVERKLYKTK LCVLYQRGRC TRPTCSFAHG DAELQRSFRF VCRLARLRME MPSSSGLSGP  60
ISMEYQLTGL VLFFVRMDFA GGRNSGVGDL RDKLDRRHSP RRSYSPGRDA RDRQKLRGHS  120
PSRSLEKKSD RKRRKTQHLD GQGEFSRSLK ISDGIEDRVK EGKATPSGSK VVLQEQNHVQ  180
LKEVQLVINR LEHQKHQLES YVEEKVQEAD ILSSRIKELE TQLQQEKEEC RRSEARLQKL  240
GDQLGLDVAK AGGNDEDSSI NIVSDAETPN YHLVGPQNDM QTISSPNKKK TYAYQDTADG  300
SMPPANLIGD GGRQAESIQL KKASHWNLHP AKSSVDIEVE AVNNGNSNHG PLADDIKLKR  360
EKSVSTSFAS VDKLKSLRSA NVLPSTGMAA HAVDEVEKID EVEMASDGIE KGATYMAKAL  420
PFRLPPPPSV PHNAYLQYEG DDENIDVVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447506.11e-149hypothetical protein CICLE_v10015598mg
RefseqXP_006469713.11e-149PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBLV4UEP21e-149V4UEP2_9R
STRINGVIT_12s0059g02450.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-48C3H family protein